LINC-NIRVANA Piston Control and Near-Infrared Polarization Images of the Orion Proplyds

This thesis is focussed on the development of optimized techniques to overcome limitations of astrophysical observations. The goal is an optimal signal estimation in noisy measurements by the consideration of underlying physical processes. This principle was applied to two different fields in astrophysics: intrumental design and analysis of polarimetric observations. In the observational part of this thesis near-infrared images of young stellar objects in the Orion constellation are studied. Limitations in resolution and sensitivity of current astronomical instruments prohibit the detailed analysis of interesting proto-stellar sources to improve theories of star formation. Radiation from the astronomical targets is not only characterized by its spectral energy, but also by polarization properties. The modeling of typical configurations of star-disk systems and the simulation of their polarization patterns helped to understand and interprete features, that were found in observations. For the case of a proto-stellar systems with both a disk and an envelope analysis techniques were developed, which are based on polarimetric effects of the scattering of light by dust. These techniques substantially improve the sensitivity and resolution and are reliable under different observing conditions. Although the obtained data did not allow investigations of substructures of the circumstellar material, the techniques are suitable to obtain constraints on star formation processes. With larger telescopes, such as the Large Binocular Telescope (LBT), the analysis of principles down to the scale of planet formation will be possible. LINC-NIRVANA, the near-infrared imaging system at the LBT, will provide unprecedented resolution and sensitivity performance combined with a wide field of view. The interferometric combination of light from two telescopes imposes new challenges in the instrument design. A so-called fringe tracker is mandatory for the interference of light at the detector by compensating optical path differences with an actuated mirror. The performance suffers from structural vibrations, limited sensitivity of sensors and processing latencies. The dynamics of actuators with significant amount of moving masses are limited. These effects are studied in the instrumental part of this thesis. Giant telescopes with large mirrors and high-resolution instruments are complex, expensive projects. The telescope time, i.e. the allocated time to the observations of individual astronomical topics, is very limited and hence valuable. It is of great importance to improve the performance in terms of sensitivity and resolution of observations under difficult conditions. By modeling all performance related subsystems of the interferometric instrument critical parameters were identified. For a realistic model several precision measurements of the telescope and parts of the LINC-NIRVANA instrument were necessary. Simulations of atmospheric effects completed the model. Several approaches for the optimization of the instrument performance were proposed. The determination of atmospheric and instrumental optical path difference or differential piston is improved by the detailed analysis of the statistical variation and appropriate filtering. The application of modern control theory provides stability and optimal dynamic response of the mirror actuator. Since both parts of this thesis deal with the impact of the atmosphere on the observational result of astronomical instruments, chapter 1 gives an overview on the basic principles and techniques. Chapter 2 presents the modeling and control analysis of the fringe tracker for the LINC-NIRVANA instrument. A software simulation is introduced and first results of a laboratory experiment are denoted. Chapter 3 gives a short introduction into star formation theories and unsolved problems, followed by the detailed description of polarimetric observations of proto-stellar objects in the Orion constellation in chapter 4. Some concepts and atmospheric effects as introduced in chapter 1 are discussed. Promising findings of one source of the sample led to extensive modeling and analysis of polarimetric properties of proto-stars and the development of innovative analysis techniques, presented in chapter 5. In the last chapter these methods are applied to the observational data and the obtained configuration parameters are compared to results of previous investigations in the literature

Skyline Query Processing

This thesis deals with a special subset of multi-dimensional set of points, called the Skyline. These points are the maxima or minima of the complete set and are of special interest for the field of decision support. Coming from basic algorithms for computing the Skyline we will develop ideas and algorithms for "on-the-fly" or online computation of the Skyline. We will also extend the concept of Skyline with new application domains leading us to user profiling with the help of Skyline

Convenções de gênero e violência sexual: A cultura do estupro no ciberespaço // Gender and sexual violence conventions: the rape culture in cyberspace

Esta etnografia do ciberespaço visa contribuir com o debate sobre o tema da violência sexual a partir da análise das narrativas dos participantes de um debate online sobre o episódio no qual o diretor teatral Gerald Thomas enfiou a mão por debaixo do vestido da repórter Nicole Bahls sem consentimento e publicamente. A análise revelou que a noção de violência sexual é atravessada por moralidades relativas a convenções de gênero e sexualidade que interferem na percepção dos direitos individuais das mulheres. Seguimos a perspectiva da crítica feminista amparada na categoria cultura do estupro como forma de denúncia pública desta violação

Lgr5+ stem and progenitor cells reside at the apex of a heterogeneous embryonic hepatoblast pool.

During mouse embryogenesis, progenitors within the liver known as hepatoblasts give rise to adult hepatocytes and cholangiocytes. Hepatoblasts, which are specified at E8.5-E9.0, have been regarded as a homogeneous progenitor population that initiate differentiation from E13.5. Recently, scRNA-seq analysis has identified sub-populations of transcriptionally distinct hepatoblasts at E11.5. Here, we show that hepatoblasts are not only transcriptionally but also functionally heterogeneous, and that a subpopulation of E9.5-E10.0 hepatoblasts exhibit a previously unidentified early commitment to cholangiocyte fate. Importantly, we also identify a subpopulation constituting 2% of E9.5-E10.0 hepatoblasts that express the adult stem cell marker Lgr5, and generate both hepatocyte and cholangiocyte progeny that persist for the lifespan of the mouse. Combining lineage tracing and scRNA-seq, we show that Lgr5 marks E9.5-E10.0 bipotent liver progenitors residing at the apex of a hepatoblast hierarchy. Furthermore, isolated Lgr5+ hepatoblasts can be clonally expanded in vitro into embryonic liver organoids, which can commit to either hepatocyte or cholangiocyte fates. Our study demonstrates functional heterogeneity within E9.5 hepatoblasts and identifies Lgr5 as a marker for a subpopulation of bipotent liver progenitors.M.H. is a Wellcome Trust Sir Henry Dale Fellow and is jointly funded by the Wellcome Trust and the Royal Society (104151/Z/14/Z); M.H. and N.P. are funded by a Horizon 2020 grant (LSFM4LIFE). C.H. was funded by a Cambridge Stem Cell Institute Seed funding for interdisciplinary research awarded to M.H. and B.D.S., B.D.S acknowledges funding from the Royal Society E.P. Abraham Research Professorship (RP\R1\180165) and Wellcome Trust (098357/Z/12/Z). W.L. and B.G. were supported by programmatic funding from the Wellcome Trust, CRUK and Bloodwise, core infrastructure support from the Wellcome and MRC to the Wellcome & MRC Cambridge Stem Cell Institute, and an MRC Clinical Research Infrastructure grant supporting single cell molecular analysis. S.R. was funded on a Herchel-Smith Fellowship. The authors acknowledge core funding to the Gurdon Institute from the Wellcome Trust (092096) and CRUK (C6946/A14492)

Verification of electromagnetic calorimeter concept for the HADES spectrometer

The HADES spectrometer currently operating on the beam of SIS18 accelerator in GSI will be moved to a new position in the CBM cave of the future FAIR complex. Electromagnetic calorimeter (ECAL) will enable the HADES@FAIR experiment to measure data on neutral meson production in heavy ion collisions at the energy range of 2-10 A GeVon the beam of the new accelerator SIS100. Calorimeter will be based on 978 massive lead glass modules read out by photomultipliers and a novel front-end electronics. Secondary gamma beam with energies ranging from 81 MeV up to 1399 MeV from MAMI-C Mainz facility was used to verify selected technical solutions. Relative energy resolution was measured using modules with three different types of photomultipliers. Two types of developed front-end electronics as well as energy leakage between neighbouring modules under parallel and declined gamma beams were studied in detail

Reconstruction and control of a time-dependent two-electron wave packet

The concerted motion of two or more bound electrons governs atomic1 and molecular2,3 non-equilibrium processes including chemical reactions, and hence there is much interest in developing a detailed understanding of such electron dynamics in the quantum regime. However, there is no exact solution for the quantumthree-body problem, and as a result even the minimal system of two active electrons and a nucleus is analytically intractable4. This makes experimental measurements of the dynamics of two bound and correlated electrons, as found in the helium atom, an attractive prospect.However, although the motion of single active electrons and holes has been observed with attosecond time resolution5-7, comparable experiments on two-electron motion have so far remained out of reach. Here we showthat a correlated two-electron wave packet can be reconstructed froma 1.2-femtosecondquantumbeatamong low-lying doubly excited states in helium.The beat appears in attosecond transient-absorption spectra5,7-9 measured with unprecedentedly high spectral resolution and in the presence of an intensity-tunable visible laser field.Wetune the coupling10-12 between the two low-lying quantum states by adjusting the visible laser intensity, and use the Fano resonance as a phase-sensitive quantum interferometer13 to achieve coherent control of the two correlated electrons. Given the excellent agreement with large-scalequantum-mechanical calculations for thehelium atom, we anticipate thatmultidimensional spectroscopy experiments of the type we report here will provide benchmark data for testing fundamental few-body quantumdynamics theory in more complex systems. Theymight also provide a route to the site-specificmeasurement and control of metastable electronic transition states that are at the heart of fundamental chemical reactionsWe thank E. Lindroth for calculating the dipole moment (2p2|r|sp2,3+), and also A. Voitkiv, Z.-H. Loh, and R. Moshammer for helpful discussions. We acknowledge financial support by the Max-Planck Research Group Program of the Max-Planck Gesellschaft (MPG) and the European COST Action CM1204 XLIC. L. A. and F. M. acknowledge computer time from the CCC-UAM and Mare Nostrum supercomputer centers and financial support by the European Research Council under the ERC Advanced Grant no. 290853 XCHEM, the Ministerio de Economía y Competitividad projects FIS2010-15127, FIS2013-42002-R and ERA-Chemistry PIM2010EEC-00751, and the European grant MC-ITN CORIN

Tools and data services registry: a community effort to document bioinformatics resources

Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR—the European infrastructure for biological information—that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools

Stroke genetics informs drug discovery and risk prediction across ancestries

Previous genome-wide association studies (GWASs) of stroke - the second leading cause of death worldwide - were conducted predominantly in populations of European ancestry(1,2). Here, in cross-ancestry GWAS meta-analyses of 110,182 patients who have had a stroke (five ancestries, 33% non-European) and 1,503,898 control individuals, we identify association signals for stroke and its subtypes at 89 (61 new) independent loci: 60 in primary inverse-variance-weighted analyses and 29 in secondary meta-regression and multitrait analyses. On the basis of internal cross-ancestry validation and an independent follow-up in 89,084 additional cases of stroke (30% non-European) and 1,013,843 control individuals, 87% of the primary stroke risk loci and 60% of the secondary stroke risk loci were replicated (P < 0.05). Effect sizes were highly correlated across ancestries. Cross-ancestry fine-mapping, in silico mutagenesis analysis(3), and transcriptome-wide and proteome-wide association analyses revealed putative causal genes (such as SH3PXD2A and FURIN) and variants (such as at GRK5 and NOS3). Using a three-pronged approach(4), we provide genetic evidence for putative drug effects, highlighting F11, KLKB1, PROC, GP1BA, LAMC2 and VCAM1 as possible targets, with drugs already under investigation for stroke for F11 and PROC. A polygenic score integrating cross-ancestry and ancestry-specific stroke GWASs with vascular-risk factor GWASs (integrative polygenic scores) strongly predicted ischaemic stroke in populations of European, East Asian and African ancestry(5). Stroke genetic risk scores were predictive of ischaemic stroke independent of clinical risk factors in 52,600 clinical-trial participants with cardiometabolic disease. Our results provide insights to inform biology, reveal potential drug targets and derive genetic risk prediction tools across ancestries.</p

Stroke genetics informs drug discovery and risk prediction across ancestries

Previous genome-wide association studies (GWASs) of stroke — the second leading cause of death worldwide — were conducted predominantly in populations of European ancestry1,2. Here, in cross-ancestry GWAS meta-analyses of 110,182 patients who have had a stroke (five ancestries, 33% non-European) and 1,503,898 control individuals, we identify association signals for stroke and its subtypes at 89 (61 new) independent loci: 60 in primary inverse-variance-weighted analyses and 29 in secondary meta-regression and multitrait analyses. On the basis of internal cross-ancestry validation and an independent follow-up in 89,084 additional cases of stroke (30% non-European) and 1,013,843 control individuals, 87% of the primary stroke risk loci and 60% of the secondary stroke risk loci were replicated (P < 0.05). Effect sizes were highly correlated across ancestries. Cross-ancestry fine-mapping, in silico mutagenesis analysis3, and transcriptome-wide and proteome-wide association analyses revealed putative causal genes (such as SH3PXD2A and FURIN) and variants (such as at GRK5 and NOS3). Using a three-pronged approach4, we provide genetic evidence for putative drug effects, highlighting F11, KLKB1, PROC, GP1BA, LAMC2 and VCAM1 as possible targets, with drugs already under investigation for stroke for F11 and PROC. A polygenic score integrating cross-ancestry and ancestry-specific stroke GWASs with vascular-risk factor GWASs (integrative polygenic scores) strongly predicted ischaemic stroke in populations of European, East Asian and African ancestry5. Stroke genetic risk scores were predictive of ischaemic stroke independent of clinical risk factors in 52,600 clinical-trial participants with cardiometabolic disease. Our results provide insights to inform biology, reveal potential drug targets and derive genetic risk prediction tools across ancestries